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RNA2seg 0.1.0 documentation
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RNA2seg 0.1.0 documentation
  • Installation Guide
  • User guide
    • Apply RNA2seg on spatial data
    • Training RNA2seg on Zarr-Saved SpatialData
  • Pretrained Model
  • Modules
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User guideΒΆ

  • Apply RNA2seg on spatial data
    • Step 1: Create patches from Zarr files
    • Step 2: Initialize a RNA2segDataset
    • Step 3: Initialize a model RNA2seg
    • Step 4: Run segmentation
    • Step 5: Visualize segmentation
  • Training RNA2seg on Zarr-Saved SpatialData
    • Import
    • Step 1: Create training patches from Zarr files
    • Step 2: Create a Consistent Target for Training RNA2seg
    • Step 3: Training RNA2seg
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Apply RNA2seg on spatial data
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